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Build - Sample- FIles - etc
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Select a 'Slice Cutting ' job:
Heart - Jobname1
Liver - Jobname2
Liver - Jobname4
Heart - Jobname3
Type of assembly:
Select
Novel transcript
Known transcript
My transcript
Sort transcript
Another transcript
Both novel & known transcript
Library type:
fr-unstranded
Add Tab:
Add Tab
Max. intron length:
Select
Homo sapiens genome build 19
Job 4430
Job 4440
Job 4431
Job 4441
Minimum isoform fraction:
Pre-mRNA fraction:
Run bias correction:
Yes
No
Account for multiple mapping:
Yes
No
Normalize by compatible counts:
Yes
No
Ignore reads from transcripts in the given file (gtf/gff):
Abundance estimation
Assembly
RABT
Expected fragment length:
S.D. for fragment length distribution:
Normalize by the upper quartile:
Yes
No
Iterations during max. likelihood estimation:
Alpha value for binomial test:
Anchor fraction:
Min. number of transfrag:
Overhang tolerance:
Max. genomic length:
Min. intron size:
Min. coverage for 3' trimming:
Coverage fraction for 3' trimming:
Overhang tolerance (3' end):
Intron overhang tolerance:
Disable tiling:
Yes
No
Reset:
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Sl.No.
Job Id
Created Date
Job Status
1
4435
2011-11-03T19:48:08
Success
[View Summary]
2
4436
2011-11-03T19:48:08
Success
[View Summary]
3
4442
2011-11-03T19:48:08
Success
[View Summary]
4
4443
2011-11-03T19:48:08
Success
[View Summary]